Installation¶

Installation With Docker¶

The fastest way to contact the package is to use docker.

You can download the docker image from dockerhub

docker pull acostapazo/bob.paper.icb2019.gradgpad:latest

or build it from Dockerfile

docker build --no-cache -t acostapazo/bob.paper.icb2019.gradgpad:latest .

To check that everything is going well, use:

docker run \
    -v $(pwd):/bob.paper.icb2019.gradgpad acostapazo/bob.paper.icb2019.gradgpad:latest \
    bin/bash -c "source activate bob.paper.icb2019.gradgpad; \
                 cd bob.paper.icb2019.gradgpad; \
                 ./ci.sh"

This command will execute the following steps

mount a the code as a volume (-v $(pwd):/bob.paper.icb2019.gradgpad)
activate the conda environment (source activate bob.paper.icb2019.gradgpad)
move to mounted path (cd bob.paper.icb2019.gradgpad)
execute continuous integration script (ci.sh)

Installation With Conda¶

Install conda
Create a conda env

conda env create -f envs/ubuntu_environment.yml

or if run this in macosx platform

conda env create -f envs/mac_environment.yml

Activate the environment and add some channels

source activate bob.paper.icb2019.gradgpad